Welcome
Participating Sites
Teaching Assistants
Group Discussion Etiquette
Software Requirements
Getting Started on TeraGrid
Course Schedule
Presentation Materials for Week
  + Keynote
  + Introduction to HPC Systems
  + Hybrid MPI Programming
  + Multi-core Programming
  + Totalview Debugging Techniques
  + Parallel I/O
  + Experience from the Field
  + Eclipse
  + DDT Debugging Techniques
  + Numerical Libraries
  + Performance and Code Profiling
  + Visualization
    > Overview and Introduction to Scientific Visualization
    > Parallel Visualization, Data Formatting, Software Overview
    > Hands-on Tutorial: VisIt
    > Hands-on Tutorial: ParaView
    > Sample Datasets
Biographies for Presenters
General Exercises
  + Jacobi Exercise 1
  + Jacobi Exercise 2
  + Jacobi Exercise 3
  + Jacobi Exercise 4
  + Jacobi Exercise 5
Molecular Dynamics Background
  + Molecular Dynamics Exercise 1
  + Molecular Dynamics Exercise 2
  + Molecular Dynamics Exercise 3
  + Molecular Dynamics Exercise 4
  + Molecular Dynamics Exercise 5
Access to Other Training Resources

Software Requirements

All participants are expected to bring their own laptop to Summer School (except those students attending at NCAR, where laptops will be provided). The following client software may be required on your laptop system:

Client Software Requirements

• An SSH client WILL be needed - if you don't already have this, you can download the PuTTY SSH client from http://puttyssh.org/
• If you have a Windows machine, the Xming X server for Windows will be needed Monday afternoon and again on Thursday. See http://www.straightrunning.com/XmingNotes/
  
• Java Runtime Environment (JRE) 1.5 or later is required. If you are installing the JRE from scratch, we recommend you install JRE 1.6 from http://java.sun.com/javase/downloads/index.jsp
• The Wednesday session WILL require you to load Eclipse on your system - step-by-step guide for downloading available
• The Thursday session WILL require you to load TAU on your system - download for Windows, Mac, or Linux from http://www.cs.uoregon.edu/research/tau/downloads.php
• The Friday session WILL require that you have Visit 2.0.1 installed on your system. The download page is: https://wci.llnl.gov/codes/visit/executables.html
• The Friday session WILL require that you also have Paraview 3.8.0 installed on your system. The download page is: http://paraview.org/paraview/resources/software.html

The following is not required, but may be useful to have on your system

• An SFTP client
• A text editor
• A PDF reader

The following software will be accessed on the supercomputing systems but versions are also available for your system

• MPI download OpenMPI at http://www.openmpi.org
• OpenMP - A gnu compiler that is version 4.2.1 or greater at http://openmp.org/wp/openmp-compilers/